PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.4G030600.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family bHLH
Protein Properties Length: 206aa    MW: 23159.6 Da    PI: 5.201
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.4G030600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH37.73.6e-123883555
                        HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH  5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
                        +  +ErrRR+++ +++ +Lr l+P+      + ++Ka+i+e A+ YI++Lq
  Prupe.4G030600.1.p 38 NLHAERRRRQKLSERLLTLRALVPNI-----TNMNKATIVEDAITYIHELQ 83
                        5579*********************6.....58*****************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.7E-163096IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.58E-133186No hitNo description
Gene3DG3DSA:4.10.280.102.6E-143197IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.1293382IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.1E-93783IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.0E-123988IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0048656Biological Processanther wall tapetum formation
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 206 aa     Download sequence    Send to blast
MEFVASALDE LCITEQGKIG GRMGHRSHNN DDEYKSKNLH AERRRRQKLS ERLLTLRALV  60
PNITNMNKAT IVEDAITYIH ELQKTVNILK DQLFDMEASE EEAPEPKKEE IHSAEEMKKF  120
GIQAGVNVTQ IDGNKLWVKA ILEKKRGGFT KLMEAMTAFG FELTDTSVTT SNGAMLVSSC  180
VMGFYCETLE VEQTKELMLE IISSI*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00091SELEXTransfer from AT4G21330Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008225011.11e-142PREDICTED: transcription factor DYSFUNCTIONAL TAPETUM 1
SwissprotO819003e-48DYT1_ARATH; Transcription factor DYT1
TrEMBLM5WJT81e-116M5WJT8_PRUPE; Uncharacterized protein (Fragment)
STRINGSolyc02g079810.1.13e-62(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF55102948
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G21330.17e-46bHLH family protein